pyclarity-lims
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Practical Examples
Lims object
Entities
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Documentation overview
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Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
A
actions (pyclarity_lims.entities.Step attribute)
advance() (pyclarity_lims.entities.Step method)
all_inputs() (pyclarity_lims.entities.Process method)
all_outputs() (pyclarity_lims.entities.Process method)
allow_non_preset_values (pyclarity_lims.entities.Udfconfig attribute)
analytes() (pyclarity_lims.entities.Process method)
archived (pyclarity_lims.entities.ReagentKit attribute)
Artifact (class in pyclarity_lims.entities)
artifact (pyclarity_lims.entities.Sample attribute)
artifacts (pyclarity_lims.entities.Queue attribute)
attach_to_category (pyclarity_lims.entities.Udfconfig attribute)
attach_to_name (pyclarity_lims.entities.Udfconfig attribute)
attached_to (pyclarity_lims.entities.File attribute)
available_inputs (pyclarity_lims.entities.StepPools attribute)
available_programs (pyclarity_lims.entities.Step attribute)
B
billing_address (pyclarity_lims.entities.Lab attribute)
C
calibrant_wells (pyclarity_lims.entities.Containertype attribute)
category (pyclarity_lims.entities.ReagentType attribute)
check_version() (pyclarity_lims.lims.Lims method)
close_date (pyclarity_lims.entities.Project attribute)
concentration (pyclarity_lims.entities.Artifact attribute)
configuration (pyclarity_lims.entities.Step attribute)
Container (class in pyclarity_lims.entities)
container (pyclarity_lims.entities.Artifact attribute)
Containertype (class in pyclarity_lims.entities)
content (pyclarity_lims.entities.Note attribute)
content_location (pyclarity_lims.entities.File attribute)
create() (pyclarity_lims.entities.Entity class method)
(pyclarity_lims.entities.Sample class method)
(pyclarity_lims.entities.Step class method)
create_batch() (pyclarity_lims.lims.Lims method)
created_by (pyclarity_lims.entities.ReagentLot attribute)
created_date (pyclarity_lims.entities.ReagentLot attribute)
current_state (pyclarity_lims.entities.Step attribute)
D
date_completed (pyclarity_lims.entities.Sample attribute)
(pyclarity_lims.entities.Step attribute)
date_received (pyclarity_lims.entities.Sample attribute)
date_run (pyclarity_lims.entities.Process attribute)
date_started (pyclarity_lims.entities.Step attribute)
details (pyclarity_lims.entities.Step attribute)
E
email (pyclarity_lims.entities.Researcher attribute)
Entity (class in pyclarity_lims.entities)
epp_triggers (pyclarity_lims.entities.ProtocolStep attribute)
escalation (pyclarity_lims.entities.StepActions attribute)
expiry_date (pyclarity_lims.entities.ReagentLot attribute)
externalids (pyclarity_lims.entities.Lab attribute)
(pyclarity_lims.entities.Project attribute)
(pyclarity_lims.entities.Researcher attribute)
(pyclarity_lims.entities.Sample attribute)
F
fax (pyclarity_lims.entities.Researcher attribute)
File (class in pyclarity_lims.entities)
files (pyclarity_lims.entities.Artifact attribute)
(pyclarity_lims.entities.Process attribute)
(pyclarity_lims.entities.Project attribute)
(pyclarity_lims.entities.Sample attribute)
first_name (pyclarity_lims.entities.Researcher attribute)
first_preset_is_default_value (pyclarity_lims.entities.Udfconfig attribute)
G
get() (pyclarity_lims.entities.Entity method)
(pyclarity_lims.lims.Lims method)
get_artifacts() (pyclarity_lims.lims.Lims method)
get_batch() (pyclarity_lims.lims.Lims method)
get_container_types() (pyclarity_lims.lims.Lims method)
get_containers() (pyclarity_lims.lims.Lims method)
get_file_contents() (pyclarity_lims.lims.Lims method)
get_labs() (pyclarity_lims.lims.Lims method)
get_placement_list() (pyclarity_lims.entities.StepPlacements method)
get_placements() (pyclarity_lims.entities.Container method)
get_process_types() (pyclarity_lims.lims.Lims method)
get_processes() (pyclarity_lims.lims.Lims method)
get_projects() (pyclarity_lims.lims.Lims method)
get_protocols() (pyclarity_lims.lims.Lims method)
get_reagent_kits() (pyclarity_lims.lims.Lims method)
get_reagent_lots() (pyclarity_lims.lims.Lims method)
get_reagent_types() (pyclarity_lims.lims.Lims method)
get_researchers() (pyclarity_lims.lims.Lims method)
get_sample_number() (pyclarity_lims.lims.Lims method)
get_samples() (pyclarity_lims.lims.Lims method)
get_selected_containers() (pyclarity_lims.entities.StepPlacements method)
get_state() (pyclarity_lims.entities.Artifact method)
get_udfs() (pyclarity_lims.lims.Lims method)
get_uri() (pyclarity_lims.lims.Lims method)
get_workflows() (pyclarity_lims.lims.Lims method)
I
id (pyclarity_lims.entities.Entity attribute)
index (pyclarity_lims.entities.Stage attribute)
initials (pyclarity_lims.entities.Researcher attribute)
input_artifact_list() (pyclarity_lims.entities.Artifact method)
input_output_maps (pyclarity_lims.entities.Process attribute)
(pyclarity_lims.entities.StepDetails attribute)
input_per_sample() (pyclarity_lims.entities.Process method)
invoice_date (pyclarity_lims.entities.Project attribute)
is_controlled_vocabulary (pyclarity_lims.entities.Udfconfig attribute)
is_deviation (pyclarity_lims.entities.Udfconfig attribute)
is_editable (pyclarity_lims.entities.Udfconfig attribute)
is_published (pyclarity_lims.entities.File attribute)
L
Lab (class in pyclarity_lims.entities)
lab (pyclarity_lims.entities.Researcher attribute)
last_modified_by (pyclarity_lims.entities.ReagentLot attribute)
last_modified_date (pyclarity_lims.entities.ReagentLot attribute)
last_name (pyclarity_lims.entities.Researcher attribute)
Lims (class in pyclarity_lims.lims)
location (pyclarity_lims.entities.Artifact attribute)
lot_number (pyclarity_lims.entities.ReagentLot attribute)
M
message (pyclarity_lims.entities.StepProgramStatus attribute)
N
name (pyclarity_lims.entities.Artifact attribute)
(pyclarity_lims.entities.Container attribute)
(pyclarity_lims.entities.Containertype attribute)
(pyclarity_lims.entities.Lab attribute)
(pyclarity_lims.entities.Processtype attribute)
(pyclarity_lims.entities.Project attribute)
(pyclarity_lims.entities.ProtocolStep attribute)
(pyclarity_lims.entities.ReagentKit attribute)
(pyclarity_lims.entities.ReagentLot attribute)
(pyclarity_lims.entities.Researcher attribute)
(pyclarity_lims.entities.Sample attribute)
(pyclarity_lims.entities.Stage attribute)
(pyclarity_lims.entities.Udfconfig attribute)
(pyclarity_lims.entities.Workflow attribute)
next_actions (pyclarity_lims.entities.StepActions attribute)
Note (class in pyclarity_lims.entities)
notes (pyclarity_lims.entities.Sample attribute)
O
occupied_wells (pyclarity_lims.entities.Container attribute)
open_date (pyclarity_lims.entities.Project attribute)
original_location (pyclarity_lims.entities.File attribute)
output_containers() (pyclarity_lims.entities.Process method)
output_type (pyclarity_lims.entities.Artifact attribute)
outputs_per_input() (pyclarity_lims.entities.Process method)
P
parent_process (pyclarity_lims.entities.Artifact attribute)
parent_processes() (pyclarity_lims.entities.Process method)
parse_response() (pyclarity_lims.lims.Lims method)
permitted_containers (pyclarity_lims.entities.ProtocolStep attribute)
phone (pyclarity_lims.entities.Researcher attribute)
placement_list (pyclarity_lims.entities.StepPlacements attribute)
placements (pyclarity_lims.entities.Container attribute)
(pyclarity_lims.entities.Step attribute)
pooled_inputs (pyclarity_lims.entities.StepPools attribute)
pools (pyclarity_lims.entities.Step attribute)
post() (pyclarity_lims.entities.Entity method)
(pyclarity_lims.lims.Lims method)
presets (pyclarity_lims.entities.Udfconfig attribute)
Process (class in pyclarity_lims.entities)
process (pyclarity_lims.entities.Step attribute)
process_parameter (pyclarity_lims.entities.Process attribute)
Processtype (class in pyclarity_lims.entities)
program_names (pyclarity_lims.entities.Step attribute)
program_status (pyclarity_lims.entities.Step attribute)
Project (class in pyclarity_lims.entities)
project (pyclarity_lims.entities.Sample attribute)
properties (pyclarity_lims.entities.Protocol attribute)
Protocol (class in pyclarity_lims.entities)
protocol (pyclarity_lims.entities.Stage attribute)
protocol_name (pyclarity_lims.entities.Process attribute)
protocols (pyclarity_lims.entities.Workflow attribute)
ProtocolStep (class in pyclarity_lims.entities)
put() (pyclarity_lims.entities.Entity method)
(pyclarity_lims.entities.StepPools method)
(pyclarity_lims.lims.Lims method)
put_batch() (pyclarity_lims.lims.Lims method)
pyclarity_lims.entities (module)
Q
qc_flag (pyclarity_lims.entities.Artifact attribute)
Queue (class in pyclarity_lims.entities)
queue (pyclarity_lims.entities.ProtocolStep attribute)
queue_fields (pyclarity_lims.entities.ProtocolStep attribute)
queued_artifacts (pyclarity_lims.entities.Queue attribute)
R
reagent_kit (pyclarity_lims.entities.ReagentLot attribute)
Reagent_label (class in pyclarity_lims.entities)
reagent_label (pyclarity_lims.entities.Reagent_label attribute)
reagent_labels (pyclarity_lims.entities.Artifact attribute)
reagent_lots (pyclarity_lims.entities.Step attribute)
(pyclarity_lims.entities.StepReagentLots attribute)
ReagentKit (class in pyclarity_lims.entities)
ReagentLot (class in pyclarity_lims.entities)
ReagentType (class in pyclarity_lims.entities)
Researcher (class in pyclarity_lims.entities)
researcher (pyclarity_lims.entities.Project attribute)
result_files() (pyclarity_lims.entities.Process method)
route_artifacts() (pyclarity_lims.lims.Lims method)
S
Sample (class in pyclarity_lims.entities)
sample_fields (pyclarity_lims.entities.ProtocolStep attribute)
samples (pyclarity_lims.entities.Artifact attribute)
selected_containers (pyclarity_lims.entities.StepPlacements attribute)
set_placement_list() (pyclarity_lims.entities.StepPlacements method)
set_placements() (pyclarity_lims.entities.Step method)
shared_result_files() (pyclarity_lims.entities.Process method)
shipping_address (pyclarity_lims.entities.Lab attribute)
show_in_lablink (pyclarity_lims.entities.Udfconfig attribute)
show_in_tables (pyclarity_lims.entities.Udfconfig attribute)
Stage (class in pyclarity_lims.entities)
stages (pyclarity_lims.entities.Workflow attribute)
state (pyclarity_lims.entities.Artifact attribute)
(pyclarity_lims.entities.Container attribute)
stateless (pyclarity_lims.entities.Artifact attribute)
status (pyclarity_lims.entities.ReagentLot attribute)
(pyclarity_lims.entities.StepProgramStatus attribute)
(pyclarity_lims.entities.Workflow attribute)
Step (class in pyclarity_lims.entities)
step (pyclarity_lims.entities.Process attribute)
(pyclarity_lims.entities.Stage attribute)
(pyclarity_lims.entities.StepActions attribute)
step_fields (pyclarity_lims.entities.ProtocolStep attribute)
step_properties (pyclarity_lims.entities.ProtocolStep attribute)
StepActions (class in pyclarity_lims.entities)
StepDetails (class in pyclarity_lims.entities)
StepPlacements (class in pyclarity_lims.entities)
StepPools (class in pyclarity_lims.entities)
StepProgramStatus (class in pyclarity_lims.entities)
StepReagentLots (class in pyclarity_lims.entities)
steps (pyclarity_lims.entities.Protocol attribute)
submitter (pyclarity_lims.entities.Sample attribute)
supplier (pyclarity_lims.entities.ReagentKit attribute)
T
technician (pyclarity_lims.entities.Process attribute)
tostring() (pyclarity_lims.lims.Lims method)
trigger_program() (pyclarity_lims.entities.Step method)
type (pyclarity_lims.entities.Artifact attribute)
(pyclarity_lims.entities.Container attribute)
(pyclarity_lims.entities.Process attribute)
(pyclarity_lims.entities.ProtocolStep attribute)
U
udf (pyclarity_lims.entities.Artifact attribute)
(pyclarity_lims.entities.Container attribute)
(pyclarity_lims.entities.Lab attribute)
(pyclarity_lims.entities.Process attribute)
(pyclarity_lims.entities.Project attribute)
(pyclarity_lims.entities.Researcher attribute)
(pyclarity_lims.entities.Sample attribute)
(pyclarity_lims.entities.StepDetails attribute)
Udfconfig (class in pyclarity_lims.entities)
udt (pyclarity_lims.entities.Container attribute)
(pyclarity_lims.entities.Lab attribute)
(pyclarity_lims.entities.Process attribute)
(pyclarity_lims.entities.Project attribute)
(pyclarity_lims.entities.Researcher attribute)
(pyclarity_lims.entities.Sample attribute)
(pyclarity_lims.entities.StepDetails attribute)
unavailable_wells (pyclarity_lims.entities.Containertype attribute)
upload_new_file() (pyclarity_lims.lims.Lims method)
uri (pyclarity_lims.entities.Entity attribute)
usage_count (pyclarity_lims.entities.ReagentLot attribute)
V
validate_response() (pyclarity_lims.lims.Lims method)
VERSION (pyclarity_lims.lims.Lims attribute)
volume (pyclarity_lims.entities.Artifact attribute)
W
website (pyclarity_lims.entities.Lab attribute)
(pyclarity_lims.entities.ReagentKit attribute)
Workflow (class in pyclarity_lims.entities)
workflow (pyclarity_lims.entities.Stage attribute)
workflow_stages (pyclarity_lims.entities.Artifact attribute)
workflow_stages_and_statuses (pyclarity_lims.entities.Artifact attribute)
working_flag (pyclarity_lims.entities.Artifact attribute)
write() (pyclarity_lims.lims.Lims method)
X
x_dimension (pyclarity_lims.entities.Containertype attribute)
Y
y_dimension (pyclarity_lims.entities.Containertype attribute)